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GATK: Genome Analysis Tool Kit

Contents

  1. Overview of package
    1. General usage
  2. Availability of package by cluster

Overview of package

General information about package
Package: GATK
Description: Genome Analysis Tool Kit
For more information: https://gatk.broadinstitute.org/hc/en-us
Categories:
License: OpenSource (Apache2)

General usage information

The Genome Analysis TookKit (GATK) is a package for the analysis of high-throughput sequencing data. It offers a diverse selection of tools, primarily focussing on variant discovery and genotyping with a strong emphasis on data quality assurance

This module will add the gatk command to your PATH.

Available versions of the package GATK, by cluster

This section lists the available versions of the package GATKon the different clusters.

Available versions of GATK on the Zaratab cluster

Available versions of GATK on the Zaratab cluster
Version Module tags CPU(s) optimized for GPU ready?
4.4.0.0 gatk/4.4.0.0 icelake, x86_64, zen2 Y
4.2.6.1 gatk/4.2.6.1 zen2 Y






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