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freebayes: Haplotype-based variant detector

Contents

  1. Overview of package
    1. General usage
  2. Availability of package by cluster

Overview of package

General information about package
Package: freebayes
Description: Haplotype-based variant detector
For more information: https://github.com/freebayes/freebayes
Categories:
License: OpenSource (MIT)

General usage information

freebayes is a Bayesian genetic variant detector designed to find small polymorphisms, specifically single-nucleotide polymorphisms (SNPs), indels (insertions and deletions), multi-nucleotide polymorpisms (MNPs) and complex events (composite insertion and substitution evens) smaller than the length of a short-read sequencing alignment.

This module will add the freebayes and bamleftalign commands to your PATH.

Available versions of the package freebayes, by cluster

This section lists the available versions of the package freebayeson the different clusters.

Available versions of freebayes on the Zaratab cluster

Available versions of freebayes on the Zaratab cluster
Version Module tags CPU(s) optimized for GPU ready?
1.3.6 freebayes/1.3.6 zen2 Y






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